Deborah Yelon
Associate Professor
Section of Cell and Developmental Biology, UCSD

e-mail: dyelon@ucsd.edu
Lab Homepage: Yelon Lab

Yelon photo

    Organogenesis requires the carefully orchestrated arrangement of multiple cell types into a specific three-dimensional form that is essential for effective organ function. The embryonic zebrafish heart provides a clear example of the relationship between organ form and function: it is composed of two major chambers, a ventricle and an atrium, each with discrete morphological and physiological characteristics that define its functional capacity. The goal of our laboratory's research is to understand the molecular mechanisms that specify the size, shape, and attributes of each cardiac chamber. By taking advantage of the unique arsenal of genetic and embryologic experimental approaches available in zebrafish, we can identify crucial regulators of chamber formation and determine their precise impacts on cell fate and cell behavior. In the long term, this work will improve our comprehension of the etiology of congenital heart disease and inform strategies for regenerative medicine and tissue engineering.

Regulation of heart size
    Specification of the proper number of cardiac progenitor cells is a critical determinant of heart size, but we do not fully understand the network of signals that regulate the dimensions of the cardiac progenitor pool. Several types of secreted factors, including BMP, FGF, and Hedgehog, are implicated in promoting the assignment of cardiac identity. However, much less is known about the opposing factors that set limits for cardiac progenitor specification. We are therefore particularly interested in zebrafish mutants with large hearts composed of too many cardiomyocytes. Notably, our recent analyses of these mutants have revealed two potent mechanisms for restricting the formation of cardiac progenitors. These studies indicate that generation of the proper number of progenitors involves interplay between inductive and repressive pathways.

figure 1
Cardiac cells (red) develop in proximity to the vascular plexi (green) prior to heart formation. Allocation of cardiac and vascular progenitors requires interplay between cardiovascular pathways: components of vessel and blood specification pathways repress formation of cardiac progenitors and thereby limit heart size (Schoenebeck et al., 2007).

Regulation of heart shape
     An elaborate series of cell movements and cell shape changes creates the characteristic contours of the heart, and all of these cellular activities can be influenced by the surrounding environment. However, it is not clear which extrinsic and intrinsic cues regulate cell behaviors during chamber morphogenesis. By combining high-resolution live imaging with genetic analysis, we can elucidate pathways with a crucial influence on the actions of individual cardiomyocytes. To date, we have focused our attention on two particular steps of cardiac morphogenesis: the midline merger of the bilateral cardiomyocyte precursor populations and the emergence of chamber curvatures. During both of these processes, regionally restricted patterns of cell behavior underlie key features of cardiac morphology, and interactions of the cardiomyocytes with their environment have a significant impact on morphogenetic control.

figure 2
Regionally confined cell shape changes underlie the emergence of chamber curvatures. A portion of the linear heart tube (LHT) transforms into an expanded ventricle with a bulging outer curvature (OC) and a recessed inner curvature (IC). Individual cells (red, arrows) are small and round in the LHT. Cells in the OC become flattened and elongated, whereas cells in the IC remain relatively cuboidal, creating the characteristic shape of the ventricle (Auman et al., 2007).


Keegan, B.R., D. Meyer, and D. Yelon. (2004) Organization of cardiac chamber progenitors in the zebrafish blastula. Development 131: 3081-3091.

Keegan, B.R., J. Feldman, G. Begemann, P. Ingham, and D. Yelon. (2005) Retinoic acid signaling restricts the cardiac progenitor pool. Science 307: 247-249.

Auman, H.J., H. Coleman, H.E. Riley, F. Olale, H.-J. Tsai, and D. Yelon. (2007) Functional modulation of cardiac form through regionally confined cell shape changes. PLoS Biology 5: e53.

Glickman Holtzman, N.S., J.J. Schoenebeck, H.-J. Tsai, and D. Yelon. (2007) Endocardium is necessary for cardiomyocyte movement during heart tube assembly. Development 134: 2379-2386.

Schoenebeck, J.J., B.R. Keegan, and D. Yelon. (2007) Vessel and blood specification override cardiac potential in anterior mesoderm. Developmental Cell 13: 254-267.

Marques, S.R., Y. Lee, K.D. Poss, and D. Yelon. (2008) Reiterative roles for FGF signaling in the establishment of size and proportion of the zebrafish heart. Developmental Biology 321: 397-406.

Targoff, K.L., T. Schell, and D. Yelon. (2008) Nkx genes regulate heart tube extension and exert differential effects on ventricular and atrial cell number. Developmental Biology 322: 314-321.

Thomas, N.A., M. Koudijs, F.J.M. van Eeden, A.L. Joyner, and D. Yelon. (2008) Hedgehog signaling plays a cell-autonomous role in maximizing cardiac developmental potential. Development 135: 3789-3799.

Waxman, J.S., B.R. Keegan, R.W. Roberts, K.D. Poss, and D. Yelon. (2008) Hoxb5b acts downstream of retinoic acid signaling in the forelimb field to restrict heart field potential in zebrafish. Developmental Cell 15: 923-934.

Marques, S.R. and D. Yelon. (2009) Differential requirement for BMP signaling in atrial and ventricular lineages establishes cardiac chamber proportionality. Developmental Biology 328: 472-482.

de Pater, E., L. Clijsters, S. Marques, Y.-F. Lin, Z.V. Garavito-Aguilar, D. Yelon, and J. Bakkers. (2009) Distinct phases of cardiomyocyte differentiation regulate growth of the zebrafish heart. Development 136: 1633-1641.


    Deborah Yelon received her Ph.D. in 1996 from Harvard University, where she studied T cell development with Leslie Berg. She then began to investigate heart development in zebrafish as a Life Sciences Research Foundation postdoctoral fellow with Didier Stainier at the University of California, San Francisco. She was a member of the faculty of the Skirball Institute of Biomolecular Medicine at New York University School of Medicine from 2000 to 2009. She has received a Burroughs Wellcome Fund Career Award and an American Heart Association Established Investigator Award.