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Yimin Zou


Axons, synapses and neural circuits in development and disease

Normal behavioral functions rely on precise and complex neural circuits linking large ensembles of neurons. In development, axons and dendrites extend in a highly directed manner and elaborate intricate branches and arbors to establish organized patterns of synaptic connections. A genetic program plays a profound role in the formation of these networks by specifying neuronal cell types, positioning neurons, guiding axons and dendrites and forming appropriate functional synapses. Neural activity shapes circuit development and coordinate with the genetic program.

After the nervous system matures, certain areas of nervous system remain highly plastic in adulthood, whereas others are much less malleable. The regenerative ability of the adult central nervous system is generally highly limited. Abnormal circuit development and degenerative disorders lead to behavioral deficits.

1. Molecular and Cellular Mechanisms of Axon Guidance

Guidance cues for axon wiring

Axonal connections are highly organized and precisely patterned. Much of the organization is achieved by the action of a large number of guidance cues, which control the direction of axon pathfinding and target selection in development. We are studying the role of essential molecular determinants in central nervous system axon wiring, particularly extracellular morphogens and classic axon guidance molecules by using spinal cord commissural neurons, dorsal root ganglion neurons, retinal ganglion cells, corticospinal tracts, and serotonergic and dopaminergic neurons.

Signaling and cell biological mechanisms

The growth cone is a specialized structure localized at the tip of a growing axon responsible for sensing and responding to the guidance cues present in its micro-enviroment. Guidance molecules are detected by receptors on the surface of growth cones. Once the cues bind to their receptors, signals are then transduced across the plasma membrane and interpreted in the growth cones. We found that signaling pathways that specify the apical-basal and planar cell polarity of epithelial cells mediate Wnt signaling in axon guidance. We recently found that apical-basal polarity signaling component, aPKC, promotes the endocytosis of a planar cell polarity component, Frizzled3, and may be part of an amplification mechanism for asymmetric signalling among growth cone filopodia.
Axons face multiple guidance molecules and need to integrate signaling activities to make correct guidance decisions. For axons that travel a long distance, they often have complex trajectories that are made of segments punctuated by intermediate targets before they reach their final target area. Growth cones commonly stay at the intermediate targets for certain period of time, change their responsiveness and become sensitive to new guidance cues when they leave the intermediate targets. We are studying how growth cones integrate signaling pathways activated by different guidance cues and how their sensitivity to guidance cues change while growing across intermediate targets. We found a classic morphogen, Sonic Hedgehog can switch on responsiveness of commissural axons to Semaphorin at the midline.
The cytoskeleton and the growth cone membrane undergo significant reorganization, regulated by signals activated by guidance molecules. But little is known about how these changes cause growth cone turning. We are using the Wnt family guidance molecules as a model system to study the fundamental cellular machinery responsible for growth cone turning and to understand how this machinery responds to guidance cues. For this, we are using live imaging techniques combined with biochemistry and molecular biology approaches.

2. Wiring for Function

The connections in the nervous system are highly specific and organized. Part of the organization is set up during pathfinding where axon-axon interactions self sort each other and directional cues lead them to proper target area. Once axons arrive at the target area, they need to establish various patterns of synaptic connections by seeking out correct post-synaptic partners.

One type of synaptic connection pattern is topographic connections, which convey smooth and continuous positional information between two connected areas. Our studies suggest that diffusible guidance cues, such as Wnts, also play a role in specifying topographic position by controlling axon target selection. We found that Wnt3 and EphrinB1 are two counterbalancing mapping forces in retinotectal projections along the dorsal-ventral (medial-lateral) axis. We are currently testing whether this "two-molecular-gradient model" is a general mechanism for topographic mapping and how two opposing mapping activities lay out topographic connections. Another common wiring strategy is laminar-specific targeting. For example, different retinal ganglion cell axons find their synaptic targets in different recipient layers in the optic tectum (in chick) and superior colliculus (in mammals). Layer-specific targeting contributes significantly to the specific patterns of synaptic connections and creates cellular and subcellular precisions, which are essential for encoding behavior. We are investigating the mechanisms of this level of brain wiring to understand how functional neural circuits emerge from the molecular cues and their potential interactions with neural activity in this process. We are also studying how specificity of synaptic connections are achieved in the hippocampus for memory formation and how abnormal connectivity contributes to neurological and psychiatric disorders.

3. Axon regeneration and neural circuit repair

In the adult mammalian central nervous system axons generally do not naturally regenerate. We are interested in understanding the mechanisms regulating axon regrowth and regeneration and how these mechanisms could be used to repair the injured central nervous system.

Traumatic injury in the central nervous system leads to changes of gene expression in the injured areas as well as in neurons whose connections are altered. Some of these induced genes are important regulators of developmental processes, such as axon guidance. However, the roles of these reinduced developmental genes in injury response are unclear. We are studying the role of reinduced Wnt signaling system in injury response, including regulating axon regeneration. The reinduced Wnt inhibitory system also limits sensory axon regeneration even after conditioning lesion, suggesting that Wnt-Ryk signaling is a general barrier for axon regeneration in the central nervous system. We found that blocking Wnt repulsion can improve proprioceptive function recovery in a novel conditioning lesion model.

The reinduced Wnt signaling system likely influences glial and inflammatory responses that play significant roles. We are dissecting the role of Wnt signaling in astrogliosis, myelination and microglia activation. Our final goal is to develop therapeutic approaches based on more complete knowledge about CNS injury to promote regeneration and functional recovery.

4. Mechanisms of Neurodegenerative Disorders

Axon loss in degenerative disorders or traumatic injury leads to permanent changes/loss of circuits and function, making it challenging to improve function in affected patients. Because in the mammalian central nervous system axons generally do not naturally regenerate, another approach to try to prevent, or treat neurodegenerative disorders would be by protecting the existing neurons and axons, and impeding their degeneration. We are studying the mechanisms that control axon stability and protection, as well as the ones that lead to axon degeneration in several neurodegenerative disease models, such as amyotrophic lateral sclerosis (ALS) and traumatic injury. We recently found that the expression of Wnt signaling components that are critical for axon guidance in development is drastically changed in a mouse model of ALS. Our aim is to understand the neurobiological mechanisms that regulate the stability of axons with the aim to develop new therapies for axon protection.


  • Edmund Hollis 2nd, Nao Ishiko, Ting Yu , Chin-Chun Lu, Ariela Haimovich, Kristine Tolentino, Alisha Richman, Anna Tury, Shih-Hsiu Wang, Maysam Pessian, Euna Jo, Alex Kolodkin and Yimin Zou. Ryk controls remapping of motor cortex during functional recovery after spinal cord injury. Nature Neurosci. 2016 May;19(5):697-705
  • Edmund R Hollis II, Nao Ishiko, Maysam Pessian, Kristine Tolentino, Corinne A. Lee-Kubli, Nigel A. Calcutt and Yimin Zou*. Remodeling of spared proprioceptive circuit of a small number of neurons supports major functional recovery. Nature Communications. 2015 Jan 19;6:6079. doi: 10.1038/ncomms7079.
  • Edmund R Hollis II, Nao Ishiko, Kristine Tolentino, Ernest Doherty, Maria J. Rodriguez, Nigel Calcutt and Yimin Zou*. A novel and robust pre-conditioning lesion induced by ethidium bromide. Experimental Neurology. 2014 Dec 23. pii: S0014-4886(14)00389-6.
  • Keisuke Onishi, Edmund Hollis and Yimin Zou. Axon guidance and injury-lessons from Wnts and Wnt signaling. Curr Opin Neurobiol. 2014 Aug;27C:232-240.
  • Keisuke Onishi, Beth Shafer, Charles Lo, Fadel Tissir, Andre M. Goffinet, and Yimin Zou. Antagonistic Functions of Dishevelleds Regulate Frizzled3 Endocytosis via Filopodia Tips in Wnt-Mediated Growth Cone Guidance. The Journal of Neuroscience, December 4, 2013 *33(49):19071-1908.
  • Anna Tury, Kristine Tolentino and Yimin Zou. Altered expression of atypical PKC and Ryk in the spinal cord of a mouse model of amyotrophic lateral sclerosis. Dev Neurobiology 2013 Oct 7. doi: 10.1002/dneu.22137
  • Yimin Zou (2012). Does planar cell polarity signaling steer growth cones? Curr. Top. Dev. Biol. 101:141-160.
  • Edmund Hollis II and Yimin Zou (2012). Reinduced Wnt signaling limits regenerative potential of sensory axons in the spinal cord following conditioning lesion. Proc. Natl. Acad. Sci. USA 109(36):14663-14668.
  • Edmund Hollis II and Yimin Zou (2012). Expression of the Wnt signaling system in central nervous system axon guidance and regeneration. Front. Mol. Neurosci. 5:5.
  • Yimin Zou (2011). When it is hard to get to with genetics--planar cell polarity under a chemical scalpel. Chem. Biol. 18(11):1350-1351.
  • Beth Shafer, Keisuki Onishi, Charles Lo, Gulsen Colakoglu, Zou Y. (2011). Vangl2 promotes Wnt/planar cell polarity-like signaling by antagonizing Dvl1-mediated feedback inhibition in growth cone guidance. Devel. Cell 20(2):177-191.
  • Ali G. Fenstermaker, Asheeta A. Prasad, Ahmad Bechara, Youri Adolfs, Fadel Tissir, Andre Goffinet, Yimin Zou, and R. Jeroen Pasterkamp (2010). Wnt/Planar cell polarity signaling controls the anterior-posterior organization of monoaminergic axons in the brainstem. J. Neurosci. 30(47):16053-16064.
  • Barry J. Dickson and Yimin Zou (2010). Navigating Intermediate Targets: The Nervous System Midline. Cold Spring Harbor Perspectives in Biology. Published in Advance June 9, 2010 (doi: 10.1101/cshperspect.a002055).
  • Liseth M. Parra and Yimin Zou (2010). Sonic hedgehog induces response of commissural axons to Semaphorin repulsion during midline crossing. Nature Neurosci. 13:29-35 (doi:10.1038/nn.2457).
  • Esther Stoeckli and Yimin Zou (2009). How are neurons wired to form functional and plastic circuits? Meeting on Axon Guidance, Synaptogenesis and Neural Plasticity (Cold Spring Harbor Laboratories). EMBO J. 10(4):326-330.
  • Yimin Zou (2009). Axons find their way in the snow. Development 136:2135-2139.
  • Elizabeth K. Davis, Yimin Zou, and Anirvan Ghosh (2008). Wnts acting through canonical and noncanonical signaling pathways exert opposite effects on hippocampal synapse formation. Neural Development 3:32.
  • Yaobo Liu, Xiaofei Wang X, Chin-Chun Lu, Rachel Kerman, Oswald Steward, Xiao-Ming Xu, and Yimin Zou. (2008). Repulsive Wnt signaling inhibits axon regeneration after CNS injury. J. Neurosci. 28:8376-8382.
  • Patricia C. Salinas and Yimin Zou (2008). Wnt Signaling in neural circuit assembly. Annu. Rev. Neurosci. 31:339-358.
  • Alex M. Wolf, Anna I. Lyuksyutova, Ali G. Fenstermaker, Beth Shafer, Charles G. Lo, and Yimin Zou. (2008). Phosphatidylinositol-3-kinase-atypical protein kinase C signaling is required for Wnt attraction and anterior-posterior axon guidance. J. Neurosci. 28:3456-3467.
  • Yimin Zou and Anya I. Lyuksyutova (2007). Morphogens as conserved axon guidance cues. Curr. Opin. Neurobiol. 17:22-28.
  • Yimin Zou. (2006). Navigating the anterior-posterior axis with Wnts. Neuron. 49(6):787-789.
  • Adam Schmitt, Jun Shi, Alex Wolf, Chin-Chun Lu, Leslie A. King and Yimin Zou. (2006). Wnt-Ryk signaling mediates medial-lateral retinotectal topographic mapping. Nature 439(7072):31-37.
  • Lee Fradkin, Gian Garriga , Patricia C. Salinas, John Thomas, Xiang Yu and Yimin Zou (2005). Wnt signaling in neural circuit development (minireview). J. Neurosci. 25(45):10376-10378.
  • Yaobo Liu, Jun Shi, Chin-Chun Lu, Zheng Bei Wang, Anna I. Lyuksyutova, Xuejun Song and Yimin Zou (2005). Ryk-mediated Wnt repulsion regulates posterior-directed growth of corticospinal tract. Nature Neurosci. 8(9):1151-1159.
  • Yimin Zou (2004). Wnt signaling in axon guidance (review). Trends Neurosci. 27(9):528-532.
  • Yimin Zou, Florian Engert and Huizhong W. Tao (2004). The assembly of neural circuits (meeting report). Neuron 43(2):159-163.
  • Anna I. Lyuksyutova, Chin-Chun Lu, Nancy Milanesio, Leslie A. King, Nini Guo, Yanshu Wang, Jeremy Nathans, Marc Tessier-Lavigne and Yimin Zou (2003). Anterior-posterior guidance of commissural axons by Wnt-frizzled signaling. Science 302:1984-1988.
  • Elke Stein, Yimin Zou, Mu-ming Poo, and Marc Tessier-Lavigne (2001). Netrin-1 binds DCC to stimulate axon outgrowth and turning independent of adenosine A2B receptor activation. Science 291(5510):1976-1982.
  • Yimin Zou, Esther Stoeckli, Hang Chen, and Marc Tessier-Lavigne (2000). Squeezing axons out of the gray matter: A role for slit and semaphorin proteins from midline and ventral spinal cord. Cell 102:363-375.
  • Hang Chen, Anil Bagri, Joel A. Zupicich, Yimin Zou, Esther Stoeckli, Samuel J. Pleasure, Daniel H. Lowenstein, William C. Skarnes, Alain Chedotal, and Marc Tessier-Lavigne (2000). Neuropilin-2 regulates the development of select cranial and sensory nerves and hippocampal mossy fiber projections. Neuron 25(1):43-56.


Yimin Zou graduated from Shanghai Fudan University and was a CUSBEA (China and United States Biochemistry Examination and Application Program) student and received his Ph. D. from University of California, Davis and San Diego, in 1995. He did his postdoctoral fellowship at University of California, San Francisco from 1996 to 2000 and was an Assistant and Associate Professor at the University of Chicago from 2000 to 2006. He joined the faculty in July, 2006.