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Emma Farley

Select Publications

  • DeBoever C, Li H, Arias A, Reyna J, Olson K M, Hui H, Biggs W,  Sandoval E, Hiroko M, Ren, B, Benaglio P, Nariai N, Smith E, D'Antonio-Chronowska, A, *Farley E K,  *Frazer, K A. (in Press). Large-Scale Profiling Reveals the Influence of Genetic Variation on Gene Expression in Human Induced Pluripotent Stem Cells.  Cell Stem Cell.

  • Farley, E. K., Olson, K. M., Zhang, W., Rokhsar, D. S., & Levine, M. S. (2016). Syntax compensates for poor binding sites to encode tissue specificity of developmental enhancers. Proceedings of the National Academy of Sciences, 113(23), 6508-6513. doi:10.1073/pnas.1605085113

  • Farley, E. K., Olson, K. M., Zhang, W., Brandt, A. J., Rokhsar, D. S., & Levine, M. S. (2015). Suboptimization of developmental enhancers. Science, 350(6258), 325-328. doi:10.1126/science.aac6948

  • Farley, E. K., Olson, K. M., & Levine, M. S. (2015). Regulatory Principles Governing Tissue Specificity of Developmental Enhancers. Cold Spring Harbor Symposia on Quantitative Biology, 80, 27-32. doi:10.1101/sqb.2015.80.027227

  • Farley, E. K. (2013). Gene Transfer in Developing Chick Embryos: In Ovo Electroporation. Methods in Molecular Biology Neural Development, 141-150. doi:10.1007/978-1-62703-444-9_14

  • Farley, E., & Levine, M. (2012). HOT DNAs: a novel class of developmental enhancers. Genes & Development, 26(9), 873-876. doi:10.1101/gad.192583.112

  • Farley, E. K., Gale, E., Chambers, D., & Li, M. (2011). Effects of in ovo electroporation on endogenous gene expression: genome-wide analysis. Neural Development, 6(1), 17. doi:10.1186/1749-8104-6-17

  • Gennet, N., Gale, E., Nan, X., Farley, E., Takacs, K., Oberwallner, B., . . . Li, M. (2011). Doublesex and mab-3-related transcription factor 5 promotes midbrain dopaminergic identity in pluripotent stem cells by enforcing a ventral-medial progenitor fate.  Proceedings of the National Academy of Sciences, 108 (22), 9131-9136. doi:10.1073/pnas.1016679108

  • Farley, E. K., Gale, E., Gennet, N., Nan, X., & Li, M. (2010). Novel transcription factor involved in neurogenesis. Developmental Biology, 344(1), 493. doi:10.1016/j.ydbio.2010.05.439

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