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School of Biological Sciences School of Biological Sciences

BI**194: Spring 2025 Course Descriptions

Disclaimer: Students may not receive credit for a second attempt of the same topic that was previously completed.

Course BIBC 194 A00
Instructor Ernst, Andreas
Title Mechanistic Cell Biology
Description We will discuss recent publications from UCSD faculty who perform research in the field of ‘Mechanistic Cell Biology’. The goal for this course is to learn how to critically read and interpret primary literature, and to gain an overview of state-of-the art methods employed in current research at UCSD.
Prerequisites Please see the Biology Course Prerequisites page for most current prerequisite information.
Course BIBC 194 B00
Instructor Saier, Milton
Title The Biochemistry of Microbes
Description We shall discuss numerous topics dealing with the biochemistry of bacteria, including motility, chemotaxis, membrane transport, metabolism, reactions to stress, and other topics, particularly of interest to students. Each student will prepare a short (~10 min) talk on a relevant topic of her/his interest.
Prerequisites Please see the Biology Course Prerequisites page for most current prerequisite information.
Course BIMM 194 A00
Instructor Russell, Alistair
Title Theory and Application of High-throughput Genetics
Description In the modern era, sequencing and computational analysis has allowed for the simultaneous measurement of thousands of perturbations to cellular, or microbial, systems. Classical genetic approaches, with one gene and one phenotype, can now be expanded dramatically to understand how entire genomes encode complex behaviors. This class will cover the foundations of sequencing, caveats in data analysis, and new techniques in high-throughput genetics as applied to cellular or microbial systems. Students should have a solid foundation in molecular biology and ideally genetics before taking this class. Students will read and discuss primary literature as a means of understanding the state-of-the-art applications of these methods.
Prerequisites Please see the Biology Course Prerequisites page for most current prerequisite information.
Course BIPN 194 A00
Instructor Glasgow, Stacey
Title Glia in Health and Disease
Description A discussion-based course that evaluates current literature related to the function of glial cell function and dysfunction in disease states.
Prerequisites Please see the Biology Course Prerequisites page for most current prerequisite information.
Course BIPN 194 B00
Instructor Augustine, Vineet
Title Interoception: The Brain’s Perception of the Body and Its Needs
Description

Animals continuously monitor internal signals from their bodies to maintain homeostasis and respond to physiological needs. This process, known as interoception, involves the brain's ability to sense, interpret, and respond to signals from internal organs such as the heart, lungs, and gut. Interoceptive systems play a crucial role in regulating hunger, thirst, pain, and emotional states, thereby influencing survival, well-being, and behavior.


This course will explore the molecular, cellular, and neural mechanisms underlying interoception. Through weekly discussions of two to three key research articles, we will review foundational discoveries, assess emerging perspectives, and develop expertise in critically analyzing scientific literature. Topics will include how the brain integrates interoceptive signals, the role of neural circuits in regulating homeostasis, and how interoception influences behavior and mental states. By the end of the course, students will gain a deep understanding of the complex interplay between brain and body, and its implications for health and disease.

Prerequisites Please see the Biology Course Prerequisites page for most current prerequisite information.
Course BIPN 194 C00
Instructor Reinagel, Pamela
Title Sensory Neural Circuits
Description Student-led discussion of primary research articles addressing neural mechanisms of sensory perception at the cellular to circuit levels. Students will present both classic and modern papers that relate neuroanatomy and/or neurophysiology to sensory behavior in a variety of sensory pathways and animal species. Discussion will emphasize comparative and ethological perspectives.
Prerequisites Please see the Biology Course Prerequisites page for most current prerequisite information.
Course BISP 194 A00
Instructor Greenspan, Ralph
Title The Neurology of Consciousness and Higher Cognition
Description Students make presentations of research papers on consciousness and higher cognition in humans, mice, octopuses, honeybees, jumping spiders, and fruit flies; after an introductory lecture on theories of consciousness.
Prerequisites Please see the Biology Course Prerequisites page for most current prerequisite information.
Course BISP 194 B00
Instructor Nguyen, Vu
Title Organization and Dynamics in the Cell Nucleus
Description The cell nucleus houses its DNA and hosts numerous processes that regulate expression of this genetic material. Advanced imaging technologies have illuminated distinct subnuclear compartments and live traffic of biomolecules on DNA and through nuclear space. Through primary literature, this course will cover established models of regulated gene expression and discuss emerging models of the organized, dynamic nucleus. Key topics include genome packaging, phase separation, live-cell microscopy, and dysregulated nuclear biology in human diseases.
Prerequisites Please see the Biology Course Prerequisites page for most current prerequisite information.
Course BISP 194 C00
Instructor Patrick, Gentry
Title Molecular Mechanisms of Learning and Memory
Description

FORMAT: Critical “highly interactive” group discussion of published papers facilitated by small group presenters.


DESCRIPTION: We will explore primarily postsynaptic mechanisms of synaptic plasticity. This will include published work which has addressed the importance of glutamate receptor trafficking, postsynaptic scaffold and key signaling molecules, actin cytoskeleton, gene expression, protein synthesis, and protein degradation. Our goal will be to understand current views about the molecular mechanisms of synaptic plasticity and to gain experience in critical thinking about experiments and results.

Prerequisites Please see the Biology Course Prerequisites page for most current prerequisite information.
Questions? Contact Student & Instructional Services (Pacific Hall 1128) through the Virtual Advising Center (VAC) or by phone at 858-534-0557